PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927662.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 467aa    MW: 50489.8 Da    PI: 8.4137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927662.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76e-115783127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C +++rtG C+yG +C+++H+p
  XP_010927662.1 57 PGEPDCAYYLRTGLCRYGLTCRYNHPP 83
                    5789*********************96 PP

2zf-CCCH39.11.2e-12104128327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_010927662.1 104 QPECQYYLKTGTCKFGATCKFHHPK 128
                     799********************96 PP

3zf-CCCH361.2e-11150174327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+G++CkF+H++
  XP_010927662.1 150 EKECAYYLRTGQCKFGNTCKFHHPQ 174
                     679********************97 PP

4zf-CCCH41.52.3e-13310335227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ CkF+H++
  XP_010927662.1 310 DQPECQFYMKTGDCKFGAACKFHHPK 335
                     689*********************96 PP

5zf-CCCH37.92.9e-12355381127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010927662.1 355 PGEPLCVFYSRYGICKFGPNCKFDHPM 381
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2585684IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-55683IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-85883IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-56184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338101129IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10104128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6105130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4107127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7146175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422147175IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5147174IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4153173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.647308336IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5308335IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6311338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5314336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197354382IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-8354381IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9356381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5357381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4359379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDYDGAGIQT RGARAAAAAV TEASSSSLAP ALDEETMWQM NKRGSESVES GLYPERPGEP  60
DCAYYLRTGL CRYGLTCRYN HPPDRKLAIA AARIRGGYPE RVGQPECQYY LKTGTCKFGA  120
TCKFHHPKDK AGIFGRAPLN NLGYPIRPNE KECAYYLRTG QCKFGNTCKF HHPQPSNAMV  180
SLRGSPVYPP VSPASPGQQS YPGGLTSWPL SSTSFIPSPR WQGPSSYAQL ILPQGLVQVP  240
SWNAYPGHLG SVSSSESQQQ TPGTVQMYGS SRPSETSVGV QGTMSSYRSS STPMGQYALQ  300
RDNVFPERPD QPECQFYMKT GDCKFGAACK FHHPKERLVP APNCVLSPLG LPLRPGEPLC  360
VFYSRYGICK FGPNCKFDHP MATPMGIFAY SLSTSLSADA PVVRRLLASS SGPPALSLSS  420
EHPVEASTGN SRRLSMSESR QMASGDEDVE AEGSHATTSI GPVSSFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927660.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_010927662.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_010927663.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLF6GX270.0F6GX27_VITVI; Putative uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-152zinc finger protein 1